PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001853.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 219aa    MW: 24553.3 Da    PI: 5.2155
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001853.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.5e-1973125156
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              + y+GVr+++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ +++g+
  Itr_sc001853.1_g00005.1  73 PSYRGVRRRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAFSMRGA 125
                              57********.**********44465..*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.04E-2873133No hitNo description
PfamPF008474.1E-1473124IPR001471AP2/ERF domain
PROSITE profilePS5103222.57674132IPR001471AP2/ERF domain
SMARTSM003805.9E-3774138IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2374134IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-3074133IPR001471AP2/ERF domain
PRINTSPR003673.3E-107586IPR001471AP2/ERF domain
PRINTSPR003673.3E-1098114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MNSGFSSDSS PEYFSWDCRN FDSSLPFNVN DSEEMLLFGV LAQAARENSE TNSSDYSVKE  60
EEVTSETPKK EQPSYRGVRR RPWGKFAAEI RDSTRNGIRV WLGTFDKAEE AALAYDQAAF  120
SMRGAMAVLN FPVETVRESL REMRCPVEEG GSPVVALKRR HSMRQRGLNR RNGKRREVKV  180
ENVVVFEDLG VDYLEQLLSS SGTTTSSSSS SSITPNPLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2775135666ATERF1
3gcc_A3e-2775135666ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262305.14e-82PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC89e-73ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLD8VD372e-89D8VD37_ACTDE; Ethylene response factor 10
STRINGPGSC0003DMT4000348736e-79(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-55ethylene response factor 1